In vitro Studies on Antimicrobial Activities of Lactic Acid Bacteria Isolated from Fresh Vegetables for Biocontrol of Tomato Pathogens.

Aims: This study was focused on using Lactic Acid Bacteria (LAB) isolated from fresh vegetables which has been molecularly identified for in vitro control of some tomato pathogens. Study Design: The inhibitory potentials of supernatant obtained from previously characterized LAB isolates or vegetable origin were investigated against some tomato phytopathogens using agar-well method with the view to develop biological agents for some tomato disease causing organisms. Place and Duration of Study: Biotechnology Centre of Federal University of Agriculture, Abeokuta, Ogun State, Nigeria, between January 2011 and February 2012. Methodology: The antimicrobial activities of LAB against some tomato phytopathogenic bacteria which include (Xanthomonas campestries, Erwinia caratovora, and Pseudomonas syringae) were obtained by using the agar well diffusion method. Results: The result indicates that cell free culture of LAB from fresh vegetables origin (Weissella paramesenteroides, Lactobacillus pentosus, Weissella cibaria, Pediococcus pentosaceus, Weissella kimchi and Lactobacillus plantarum) can inhibits these bacteria by creating clear zones of inhibition around the wells containing cell free supernatants of the above mentioned strains of lactic acid bacteria. Pediococcus pentosaceus showed the highest zone of inhibition against Xanthomonas campestries at 15 mm radius, Weissella kimchi was the least effective against Pseudomonas syringae at 3.67 mm and Erwinia caratovora at 3.50 mm radius. Conclusion: Tomato disease causing organisms can be most likely biologically controlled by using extracts from LAB. This finding will reduce the potential hazard from the use of chemical herbicides on plant.

Isolation and Molecular Characterization of Lactic Acid Bacteria Isolated from Fresh Fruits and Vegetables Using Nested PCR Analysis.

Aims: The study investigated the diversity and identities of Lactic Acid Bacteria (LAB) isolated from different fresh fruits and vegetables using Molecular Nested PCR analysis with the view of identifying LAB with anti-microbial potentials. Study Design: Nested PCR approach was used in this study employing universal 16S rRNA gene primers in the first round PCR and LAB specific Primers in the second round PCR with the view of generating specific Nested PCR products for the LAB diversity present in the samples. Place and Duration of Study: Biotechnology Centre of Federal University of Agriculture, Abeokuta, Ogun State, Nigeria, between January 2011 and February 2012. Methodology: Forty Gram positive, catalase negative strains of LAB were isolated from fresh fruits and vegetables on Man Rogosa and Sharpe agar (Lab M) using streaking method. Standard molecular methods were used for DNA extraction (Norgen Biotek kit method, Canada), Polymerase Chain Reaction (PCR) Amplification, Electrophoresis, Purification and Sequencing of generated Nested PCR products (Macrogen Inc., USA). Results: The partial sequences obtained were deposited in the database of National Centre for Biotechnology Information (NCBI). Isolates were identified based upon the sequences as Weissella cibaria (5 isolates, 27.78%), Weissella kimchi (5, 27.78%), Weissella paramensenteroides (3, 16.67%), Lactobacillus plantarum (2, 11.11%), Pediococcus pentosaceus (2, 11.11%) and Lactobacillus pentosus (1, 5.56%) from fresh vegetable; while Weissella cibaria (4, 18.18%), Weissella confusa (3, 13.64%), Leuconostoc paramensenteroides (1, 4.55%), Lactobacillus plantarum (8, 36.36%), Lactobacillus paraplantarum (1, 4.55%) and Lactobacillus pentosus (1, 4.55%) were identified from fresh fruits. Conclusion: This study shows that potentially LAB can be quickly and holistically characterized by molecular methods to specie level by nested PCR analysis of the bacteria isolate genomic DNA using universal 16S rRNA primers and LAB specific primer.

Diversity of Bacterial Community in Fermentation of African Oil Bean Seeds (Pentaciethra macrophylla Benth) by comparison of 16S rRNA Gene Fragments.

Aims: The microbial diversity, fermentation dynamic and the predominant microorganisms involved in the fermentation of African oil bean (Pentaciethra macrophylla Benth) seeds to “Ugba” traditional African food in Eastern Nigeria were investigated by analyzing the microbial community DNA of the food using sequences of their 16S rRNA genes fragment analysis. Study Design: Universal bacterial conserved 16S rRNA gene region was used to study bacterial dynamics as well as the diversity during fermentation stages. Predominant microorganisms were investigated with the view to establishing the best possible starter culture for the production of high flavoured “Ugba”. Place and Duration of Study: Biotechnology Centre of Federal University of Agriculture, Abeokuta, Ogun State, Nigeria, between January 2007 and May 2009. Methodology: Raw seeds were boiled for two hours for easy removal of the seed coats. Peeled seed cotyledons were sliced, cooked for 4hrs until softened. Sliced cotyledons were washed, wrapped in local leafs for fermentation for a period of 96hrs. Sampling for analysis was performed, at every 24 hours interval. Bacterial Community of freshly fermenting “Ugba” was obtained by washing seeds at room temperature in 0.40% NaCl salt solution for 15 minutes. The supernatant was used for streaking on both Nutrient agar and “Ugba” agar plates and for Community DNA extraction. DNA extraction was carried out from community DNA extracts and culture isolates grown in LB (Luria – Bertani) broth at 37°C for 24 hours using Promega DNA extraction kit. Partial 16S rRNA genes of isolates DNA and entire microbial community DNA were amplified using 16S rRNA primers. Amplified fragments were cloned using the PCRTRAP. The transformed clones were sequenced and aligned with reference sequences in the NCBI data base for identification. Results: This analysis indicated that from community DNA, seventeen clones were identified as Bacillus subtilis, Nine as Bacillus pumilus, four as Bacillus licheniformis, two as Bacillaceae bacterium, two as Bacillus sp Van 22, and two as Staphylococcus spp. Also, of the ten sequenced cloned isolates from the cultural technique, eight were identified as Bacillus subtilis, while two sequences were identified as Bacillus pumilus. The percentage abundance revealed that Bacillus subtilis had the highest abundance of 47.2% followed by Bacillus pumilus with 25%. Conclusion: Bacillus subtilis is the predominant species in Ugba fermentation as it had high percentage abundance throughout the fermentation period. This study indicated that molecular analysis of community DNA provides a more accurate picture of diversity and dynamics of microbial communities.